Scholars@UK
Genomic analysis of Vanessa tameamea, the threatened Hawaiian endemic butterfly, reveals population genetic structure relevant to conservation efforts
Arnold, H. E., Dupuis, J. R., Rubinoff, D., Haines, W. P., San Jose, M., Corpuz, R. L., Kauwe, A. N., Simmonds, T. J., Geib, S. M. & Sim, S. B., Dec 2025, In: Conservation Genetics. 26, 6, p. 1097-1111 15 p.Research output: Contribution to journal › Article › peer-review
Identifying sets of phylogenetically informative markers for Anastrepha (Diptera: Tephritidae)
de Brito, R. A., dos Santos, E. M., de Freitas, P. D., Dupuis, J. R. & Congrains, C., Dec 2025, In: Scientific Reports. 15, 1, 34258.Research output: Contribution to journal › Article › peer-review
Genomic and ecological divergence support recognition of a new species of endangered Satyrium butterfly (Lepidoptera, Lycaenidae)
Macdonald, Z. G., Dupuis, J. R., Glasier, J. R. N., Sissons, R., Moehrenschlager, A., Shaffer, H. B. & Sperling, F. A. H., 2025, In: ZooKeys. 1234, p. 291-304 14 p.Research output: Contribution to journal › Article › peer-review
The Cleridae and Thanerocleridae of eastern North America, with illustrated keys, updated distributions, and special emphasis on the Kentucky fauna
Chapman, E. G., Leavengood, J. M. & Dupuis, J. R., May 23 2025, In: Zootaxa. 5639, 1, p. 1-88 88 p.Research output: Contribution to journal › Article › peer-review
Increasing pasture diet diversity in broiler chickens: Insights from DNA metabarcoding
Thongjued, K., Garcia, K., Halmos, V., Pulliam, K., Gonthier, D. J. & Dupuis, J. R., May 14 2025, In: Renewable Agriculture and Food Systems. 40, e13.Research output: Contribution to journal › Article › peer-review
Whole-Genome Evaluation of Genetic Rescue: The Case of a Curiously Isolated and Endangered Butterfly
MacDonald, Z. G., Dupuis, J. R., Glasier, J. R. N., Sissons, R., Moehrenschlager, A., Shaffer, H. B. & Sperling, F. A. H., Feb 2025, In: Molecular Ecology. 34, 4, e17657.Research output: Contribution to journal › Article › peer-review
CCS-Consensuser: A Haplotype-Aware Consensus Generator for PacBio Amplicon Sequences
Congrains, C., Bremer, F., Dupuis, J. R., Barr, N. B., Garzón-Orduña, I. J., Rubinoff, D., Doorenweerd, C., Jose, M. S., Morris, K., Kauwe, A. & Geib, S., Oct 2025, In: Molecular Ecology Resources. 25, 7, e14113.Research output: Contribution to journal › Article › peer-review
A cryptic new species of tiger swallowtail (Lepidoptera, Papilionidae) from eastern North America
Deroller, C. J., Wang, X., Dupuis, J. R. & Schmidt, B. C., 2025, In: ZooKeys. 1228, p. 69-97 29 p.Research output: Contribution to journal › Article › peer-review
Towards a better future for DNA barcoding: Evaluating monophyly- and distance-based species identification using COI gene fragments of Dacini fruit flies
Doorenweerd, C., San Jose, M., Leblanc, L., Barr, N., Geib, S. M., Chung, A. Y. C., Dupuis, J. R., Ekayanti, A., Fiegalan, E., Hemachandra, K. S., Aftab Hossain, M., Huang, C. L., Hsu, Y. F., Morris, K. Y., Maryani A. Mustapeng, A., Niogret, J., Pham, T. H., Thi Nguyen, N., Sirisena, U. G. A. I. & Todd, T. & 1 others, , Aug 2024, In: Molecular Ecology Resources. 24, 6, e13987.Research output: Contribution to journal › Article › peer-review
snpAIMeR: R package for evaluating ancestry informative marker contributions in non-model population diagnostics
Vertacnik, K. L., Vernygora, O. V. & Dupuis, J. R., Jun 1 2024, In: Bioinformatics. 40, 6, btae377.Research output: Contribution to journal › Article › peer-review
Variation in RNA interference sensitivity in the southern pine beetle, Dendroctonus frontalis (Coleoptera: Curculionidae)
Kyre, B. R., Dupuis, J., Zúñiga, G. & Rieske, L. K., Jun 1 2024, In: Biological Journal of the Linnean Society. 142, 2, p. 147-154 8 p.Research output: Contribution to journal › Article › peer-review
DNA metabarcoding diet analysis in a generalist omnivore: feeding trials reveal the efficacy of extraction kits and a multi-locus approach for identifying diverse diets
Thongjued, K., Garcia, K., Scott, D., Gonthier, D. J. & Dupuis, J. R., Sep 2024, In: Integrative Zoology. 19, 5, p. 790-806 17 p.Research output: Contribution to journal › Article › peer-review
Toward transparent taxonomy: an interactive web-tool for evaluating competing taxonomic arrangements
Vernygora, O. V., Sperling, F. A. H. & Dupuis, J. R., Apr 2024, In: Cladistics. 40, 2, p. 181-191 11 p.Research output: Contribution to journal › Article › peer-review
Biology and management of Ceutorhynchus obstrictus (Coleoptera: Curculionidae) in spring-planted canola on the Northern Great Plains
Hussain, A., Mittapelly, P., Blake, A. J., Dupuis, J. R., Bouchard, P., Skolrud, T. D., Keddie, B. A., Vankosky, M. A., Cárcamo, H. A. & Mori, B. A., 2023, In: Journal of Integrated Pest Management. 14, 1, 17.Research output: Contribution to journal › Article › peer-review
Interspecific gene flow obscures phylogenetic relationships in an important insect pest species complex
San Jose, M., Doorenweerd, C., Geib, S., Barr, N., Dupuis, J. R., Leblanc, L., Kauwe, A., Morris, K. Y. & Rubinoff, D., Nov 2023, In: Molecular Phylogenetics and Evolution. 188, 107892.Research output: Contribution to journal › Article › peer-review
Phylogenomic analysis provides diagnostic tools for the identification of Anastrepha fraterculus (Diptera: Tephritidae) species complex
Congrains, C., Dupuis, J. R., Rodriguez, E. J., Norrbom, A. L., Steck, G., Sutton, B., Nolazco, N., de Brito, R. A. & Geib, S. M., Sep 2023, In: Evolutionary Applications. 16, 9, p. 1598-1618 21 p.Research output: Contribution to journal › Article › peer-review
Recent co-evolution of two pandemic plant diseases in a multi-hybrid swarm
Rahnama, M., Condon, B., Ascari, J. P., Dupuis, J. R., Del Ponte, E. M., Pedley, K. F., Martinez, S., Valent, B. & Farman, M. L., Dec 2023, In: Nature Ecology and Evolution. 7, 12, p. 2055-2066 12 p.Research output: Contribution to journal › Article › peer-review
A comprehensive phylogeny and revised taxonomy illuminate the origin and diversification of the global radiation of Papilio (Lepidoptera: Papilionidae)
Condamine, F. L., Allio, R., Reboud, E. L., Dupuis, J. R., Toussaint, E. F. A., Mazet, N., Hu, S. J., Lewis, D. S., Kunte, K., Cotton, A. M. & Sperling, F. A. H., Jun 2023, In: Molecular Phylogenetics and Evolution. 183, 107758.Research output: Contribution to journal › Article › peer-review
HiMAP2: Identifying phylogenetically informative genetic markers from diverse genomic resources
Vernygora, O. V., Congrains, C., Geib, S. M. & Dupuis, J. R., Jul 2023, In: Molecular Ecology Resources. 23, 5, p. 1155-1167 13 p.Research output: Contribution to journal › Article › peer-review
Impact of climate change on the elevational and latitudinal distributions of populations of Tipulidae (Diptera) in Wales, United Kingdom
Devlin, J. J., Thomas, R. J., Long, S. E., Boardman, P. & Dupuis, J. R., Sep 1 2022, In: Biological Journal of the Linnean Society. 137, 1, p. 30-46 17 p.Research output: Contribution to journal › Article › peer-review
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